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Both plants are kind of tall and lanky, not sure if this is normal but I'll keep pushing. Water was pH adjusted down using apple cider vinegar. I had a plastic container over the seedlings to maintain humidity but I think that filtered out some of the light and may have caused my plants to stretch.
At some point I discovered I had spider mites which lead to the holes and other issues noted, I believe due to the lack of air circulation around the center of my plants. I began defoliating and gave both plants a full strength spray down of bonide Neem oil before turning out the lights for a few hours, this was a bad idea, I burned both plants.