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Ok Yesterday she was doing well I touched the top too see if I could cut it but I didn't, so this morning I notice the top was getting brown and I don't know if I should top it off so it wouldn't effect the lower half
Leave it alone until it’s done. Let her run her course and do the work for you. If you want a smell do a stem scratch or stem rub to smell.
Anytime you touch the flower it will burst the sacs and also bruise the flower as shown here.