yes you can. make sure you start the autos first on 18-6 for a veg for a few weeks, then put your photoperiod strains in for veg under same light. if your photoperiod plant are in flower and you decide to start a auto your yield from the auto will not be as much as if it had loner light hours.
heres a chart a bit on autos and what to expect:
3-5 weeks are the vegative stage
4-6 weeks is the stretch phase
6-10 weeks is typically the flower stage
autos are bred to do their job and make us buds, hope this helped