Oof that sucks brother. They could probably be reburied and make it after some recovery but no real way to repot them without bringing spores with you. As per prev comment domes are almost always unnecessary unless you are in the desert, and even then you would always, always remove them the moment the seed pops, any vegetation that comes up in there is just a mould target. Good to catch it early and just restart. All the best with the grow!