Within common sense, the autoflower plant cares not for the cycle of light and dark, merely what occurs per day... there's a "ceiling" of enery it can use in 1 day relative to various factors.
You can hit that ceiling after 12 hours with a powerful light... Probably won't impact yield too much. Might have a slightly lankier plant... just a guess.
Simply compensate on days this occurs by leaving it on long later, if you can. Make sure it's still getting it's 18/6 or 20/4 cycle each day, even if broken up. Probably the single biggest factor is light provided, so that's the primary concern.