Can't say that I have a definite answer but a couple things to think about. My first thought would be the calmag+. I have learned the hard way that hydro and organics usually don't play well together. I use the calimagic. And as far as the brown roots, any kind of bacteria issue tends to increase the pH rather than drop it. You can always add 2 tsp per gallon of 3% hydrogen peroxide to your reservoir. As it breaks down it releases oxygen into the water and the rogue O molecule kills any bacteria it comes in contact with.