Never a good idea, but now that you are in this situation, honestly, your best solution would be to get a second tent and seperate them.
However, considering that your autos will take anywhere between 7 and 10 weeks once they start flowering, that is a huge amount of management that will need to be undertaken on your photoperiod plants and to then expect them to maintain health in the same pots for a further 7 to 10 weeks once they start flowering is an enormous ask.
In view of these facts, I would suggest concentrating on maximizing your harvest with the photoperiod plants and wear any losses associated with flowering your autos at 12/12, as yes, flowering autos at 12/12 will reduce yield.
Next time grow all autos or all photos and never mix the two and you will avoid a whole heap of issues.