There is a difference of opinion among growers as to whether plants need to be flushed or not.... some say they do because they can taste the chemicals that had been used in the nutrients (if you grow organically, this reason evaporates as there are no chemicals!) - but those peope, imho, have overly sensitive taste buds.
I don't flush, myself. I used to, didn't find it made any difference, and it was a pain... so just skip it would be my advice.
I agree with GMSgrows on the partial harvest... autoflowers really don't like stress and chopping off the top half would be a MAJOR stress that would essentially stop the plant from doing anything more for the unharvested bottom half...
Good luck - and congrats on your grow!