ppm won't rise due to microbes. Bad microbes could cause what you see in the res and sad leaves, though.
A little h2o2? chlorine? Better google how to clean up your res.
Looks to be nearing the end, eh? I wouldn't do anything drastic, if so. A flush late is only going to hurt yield more than benefit, most liekly. If canopy is strong with minimal fade, go for it, i guess? Sometimes giving in to the OCD has it's theraputic benefits.
I'd get the grime under control, but not 100% sure it's the best idea.