MFG- I49 Blue Dream

I noticed over the last week the growth wasn’t as big as I had expected, but it’s my first grow and I’m inexperienced. I felt that maybe the plants had out grown the dixi cups I had started with, so my goal was to transplant this week, as well as introduce a sleep cycle to help the root systems develop and give them a break from the transplant shock. I also noticed the leaves seemed to be showing some kind of nutrient burn or lock out, and I would later find out what I believe to be the reason why. At first I assumed nutrient burn, since the plants had grown really fast, but I had used a potting soil for the initial planting from paper-towel germinating. I figured that the roots were developing and that the nutrients in the soil were over kill. So I prepped my water with MagNifiCal from Reno nutrients to help flush out an balance the nutrient overload. But then, my PH tester arrived and found out I had been watering with water that was way to high in PH. Thankfully I was mostly using bottled water till this point, and just used some of the really high ph tap water to dampen the soil during the transplant. Regardless, it was probably nutrient lock out as my new growth was seemingly happy, and it seemed like the nutrients it was missing were being vampired from the lower growth. I gave the plant a decent feeding with the mixture I prepped to help lower the ph in the soil and get them back on track. This week I am hoping to help the plants rebound from my negligent watering with water that was not ph tested. When I ph tested the water I was using I found the bottled water I used when I started the germination process was 7.3 or so, and then my tap water once boiled was actually at a ph of 8.5 and up. Anyone know if this will screw my crop entirely from this point forward? They seem to be recovering from the negligence, and are peeking up nicely. I did start to notice a skunky / piney smell in my tent today after waking up the ladies. Any questions or feed back hit me up.