you can do it anytime, really... i do it selectively if i want to prevent stretchign of an important shoot.
but, i'd recommend waiting until ~14 days into bloom, that way you do it 1 time, instead of multiple times and still get the same basic return when done well. this gives it 7-14 days to grow back a bit before all vegetative growth stops in bloom.
Now, with an autoflower, that's a complete guess... but, roughtly 14 days before growth stops, still is best time.
don't remove to omany from top, lie you said.. you want some light hitting lower portions so it doesn't have to truck ATP all over the place slowly.