ive grown a ton of tomatoes and peppers in containers and from my experience that won't really happen man. the plants are gonna be hella happy in that thing no matter what there is area for the roots to dig into and grow in the ground, it doesnt mean that those roots need to necessarily have a job, and some roots may rot, but it doesn't mean that that root was useful anyway. it may have grown for a specific part of the plant and then rotted and the plant then signals the rest of the plant to uptake from other roots. the amount of roots in the ground doesn't mean much because a plant can only grow so fast and so optimally, beyond that it will fix every problem given the right environment. the environment your giving it is like plant-steroids habitat. the plant will not have needed the potentially rotted root if it ''rots'' in this great environment you are giving it. it would simply just discard it while fungus bacteria trichodermia and other bioturbulent insects would clear the way for more roots to grow anyway. I saw your vid of watering the soil I think your 300 dollar tent is awesome and I wish when I built mine I could have beena bit more simpler, Now im downsizing and im going to use that little pvc tube thing to encase my little grow area because a squared wooden roof was just a stupid idea. yours looks so simple dang. wish I didn't put so much thought into mine.