In order for algae to grow it has to have light so somewhere, maybe from a lid not being closed all the way or you have an opening that isn't sealed. Since there's already algae in the system you can remove it with a SCRUB-brush, or use hydrogen peroxide (3ml of 3% H2O2 per gallon of solution) to remove it. If there are particles floating in the nutrient solution, be sure to flush the reservoir and growing chamber with ample water, and then start with a new batch of nutrients. If the problem is severe, make sure you have the algae completely flushed out to avoid the risk of clogging some of the flow lines in the system. After you use the peroxide, refill the tank with clean water and DRAIN AND REPLENISH AGAIN to rinse it good. Some info says peroxide will not help or work and will kill the plants like it kills the algae. Use common sense and don't flood the plants with peroxide, and rinse the tank thoroughly.