GMSgrowsanswered grow question 3 years ago The roots should stay down deep enough to avoid light if you have 4 or 5 inches. Only problem with using the clay like this is the cleaning the roots out for the next run, and you may end up with a lot of green algae on top. So as Wicked says., it would be best to cover and block light. Keep your ppm and ec levels correct, and you should have a great grow.